Scaffold Ga0104988_10964

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10964
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 47362
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (57.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F013404	Metagenome	271	Y
F083884	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1096464	F083884	N/A	MRQLTKKQKKILDVYKNIYRLEDLPNGVFEQLEKINDTEILWSETNRYLSDNYYKNLYNNKGVN*
Ga0104988_1096471	F003803	AGGGGG	MKKEKTLLRFRIYDGDREYTDYAIIDNKKLLTLNYKEIISVFFCDDKVDDEQFLSDGRAVRIESEIPITDIEAEKLEKLSIAFLLEFKLMEVA*
Ga0104988_1096475	F013404	GGA	MIDIKLINEADTKLMNAVNDLDDVLVAQRKIASKLIKEHKQLQEALAIMCSNADEDCPPEFRTEHFRSAITDGYDLLKKVGYFKNKKRVYKWDI*