Scaffold Ga0104988_10962

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10962
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 46653
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (43.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037196	Metagenome / Metatranscriptome	168	Y
F042896	Metagenome / Metatranscriptome	157	Y
F054636	Metagenome / Metatranscriptome	139	Y
F059435	Metagenome / Metatranscriptome	134	Y
F085616	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1096228	F059435	N/A	MNTYNIDVKGITILSQIPQNDLQKNLKLIRGLVWTSGGNDKDIEVTLNKTNSPCKI*
Ga0104988_1096229	F054636	N/A	MKLEFDEFEKDLLIDTIQQRLDTDEVLVINNSLKEELTELLRKVEEDEYL*
Ga0104988_1096230	F042896	N/A	MNLLKMQTVYVRFSYENRVSEEIPIQVELNMSKKSNRKKLLDQLLKSNSNITEVSLL*
Ga0104988_1096234	F085616	N/A	MTIITKSLQQKQERWARIAELNAQGRVMTNAQQLSIRNKQKKEDMIQERAERILNTLTQSARVSKAPMGSNTLTVEDKAPVPDANSFIPNRKKVDQLAVTANQIIDDILKG*
Ga0104988_1096236	F037196	N/A	MTNTTITLDQFHDLLADAYAVSVNDTLYFVGYDTDENPYIADNDGNDYVDLSTVDGDIEVHPNYVFFHIQEQPIQLAFLHLKKLS*