Scaffold Ga0104988_10943

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10943
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 41064
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.40%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F038565	Metagenome / Metatranscriptome	165	Y
F043788	Metagenome / Metatranscriptome	155	Y
F083776	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1094313	F017268	N/A	VNLDITTVFNLVIGALSFLGGWLFTRVFSISDRQEKLIKDLNDKTFSDFIALRKEVEIESRKHQQEIADLALKVSTTYVTKESFEAYFDRIEAKLDRNFETIQQYLMNKNKN*
Ga0104988_1094314	F083776	N/A	VIVSERDIDFFAKKLGLSPEKTFLLIQDPECLPEILNKICEDNIDGIVDISFPVFAEITIIKYSKDLKYSFKEKEYISEAVGLKFYDLIGEPILKKSILEFKHDEDTAKSLLVFLGFFYKNLNKPRRAYASENTYYNIAKNAFENSDKEEISYHLKDWIKVLRTIHNEVWF*
Ga0104988_1094335	F038565	N/A	VTNKKTFKIPDSLLKQIDECSFGGYIMFNFSSKGEPQVFTKFDNQINAMALLYYVNTWSQSVDQLNLEATTDQIARTNQEDDFDNPEDKD*
Ga0104988_1094342	F043788	GAGG	MASLDDIYDMIQKLDDANIEYLLITIQKGKKIGKADVFYSLKDKNSMKVLTEGLNKFTKEVDRLDDEGKFE*