Scaffold Ga0104988_10938

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10938
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 40692
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (84.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F018135	Metagenome	236	Y
F044438	Metagenome	154	Y
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_109384	F001094	N/A	MEQEMNKAIIKSIAGTYIRAGIAAVLALYLAGETDPKKLLAALVAAVAGPLLKALDPKQTEYGVGSKKA*
Ga0104988_1093845	F018135	GAGG	MTIEKVRHSGAYIISQFIGEGAGEYLFTRTYYGYTLAQAKAKFRTAIREGDGK*
Ga0104988_1093848	F073256	GGAGG	MKLQEIDTIDDLKLWLEENMPGSRITEDSDGDIVIHTGLISTMGGYLSERESE*
Ga0104988_1093865	F044438	AGG	MNTEIQYLKKRIAKLEMDFAGFASLLIQAKIVDVIDEDGQQVFKVNKVKLDGK*