Scaffold Ga0104988_10930

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10930
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 39708
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (78.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001706	Metagenome / Metatranscriptome	648	Y
F006544	Metagenome / Metatranscriptome	370	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F011647	Metagenome / Metatranscriptome	288	Y
F018684	Metagenome / Metatranscriptome	233	Y
F052382	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1093016	F018684	GAG	MGNEDWKLQVSYKTPSGDMINIRANTADELSVLLEGIGDYSTQISSVQQKVVGAYTLAPLSTTSSTTATKPLVSSPPTQVSAVSGTASPVCKHGPRIWREGISKASGKPYAFWACPSPQGTPDQCKPVN*
Ga0104988_1093019	F009064	GAG	MLAVERWLTKFGSTDQPNYAQGKADGRLEPEINANIRANACEWAVAKHYNMAWNNPWYPNSLHKKRFSLPDVGENVEVRSIRTQDSIPFWSKDKGKIIIGTKCLDTEYFSEVEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE*
Ga0104988_1093020	F052382	N/A	MSSYGKRKGATFETSVVKWLRSKNILAERLTKAGAKDEGDIVIIVNNEPIVLELKATKKLELPRFWEEATIESSNYAAARNLPDIPRRYVIVKRRMAGIDKAWVIEDLEQWIERISE*
Ga0104988_1093022	F008808	AGAAGG	VDKRKPVPPCPECGEHFENVFEATDHLLEDDEEFDPALILPNGYRLMIGSLLRCIYKYSDKPEHIKGIAESTYMTLFTAETQPNVVAGLIEDMIVDTQMIDLDDELKQLLEKGE*
Ga0104988_1093046	F006544	AGGAGG	MTTLAAIQGDGWCVIGSDSRSSDESGRPIEMATHKVIENNGVLIAGSGSGRGSNLLQFGWKPPKPKLSEDLDEFMTKRFIPSMRKLFIDAGYDMKEDGDHASHDSQFIIGIRGVLYPIFEDYSWDRDVRGIYYSGSGSDVALGAMEALGIRNAKYADKAEKIIRKSIEIATKWDIYSSGPIITKIQYSK*
Ga0104988_1093055	F001706	AGG	MKHWEYHPEPEDDCFGCKAMGLQMNTGDAKRDIPDKKWNAELQAYRDARAQGIQPAGTSMRHVQEAHKASEVLGKAYNADTMPKTKDINHKSAAVMKEIGQI*
Ga0104988_1093058	F011647	AGAAG	MSSGQRKRHDGFNKSIMRDGVVVILRKDGREKVRLDPKTKETIKGSK*