Scaffold Ga0104988_10923

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10923
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 39203
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (74.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F008296	Metagenome	335	Y
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F029029	Metagenome / Metatranscriptome	189	Y
F056346	Metagenome / Metatranscriptome	137	N
F100395	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1092310	F100395	AGGAG	MAYYLFKTPNVEEGPAGGHRLFHFYKLNRGISIAKSGATYSQVRYPVDEDIADYDEFYRGGYTHTVDDTTRAALIAGGVGVTSANFTAL*
Ga0104988_109232	F001599	AGG	MSKKNSIALVWCDNGMVDGKFMQGVTDVMLKSGVEFATSLRSQGNQIARQRQTVIDYWYDKTDYEWLLWVDSDVVISPEKFKLLWDNRDAEKRPLVTGVYFTTDNPEEPLMVPMPTVYSFVNDGDGGVGITRVHPLPENQLIKVDAAGMGFILMHRSIVPKVREAGPDGQVFMEIGRGTKFMGEDIFFFALCDKAEIPVYCHTGATVPHMKRFSLDEHYYKAFFGKPKEEPKSKLITPDKKIITPR*
Ga0104988_1092325	F010232	AGG	MRTREELLKIKEAFAYAMLDMLDVYDELLATGRVWVAPEPTVNDLLKNDEEANA*
Ga0104988_1092326	F010612	GAGG	MLEEDTPQWEHTVWIMAKVRCRTTHINIDTAGDEALDDPSEWHVLEFDKGIKHSQEIVRVK*
Ga0104988_1092332	F015719	AGGAG	MYYSEIDGTEPTISIQVKDTKYTFTNESLTRLIEEKEVIKTELLQVERKFKSAQFDVREFFQSKYETDSDEIVVEVNDVNELLRQIGSEELTKSWSATVTITTTITGIEAPNKEAVEDMITDNIDVNFTADGDLWVDDITVDSVYPEA*
Ga0104988_1092334	F056346	AGGAG	MSSTEAPISINLKTAGGTQITLRAETADQFADMIAQGIHIITDAVTEVELAVKGTSASKPMSVADIASSFNANISSTESGGEETVEDKWGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAGPRWTGPKIPTELRTKPIFA*
Ga0104988_1092341	F008296	AGG	VTEAWVQEYDLLVSTLAIEYSRKYSIVETADIRQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAAITYCEKEKARKFGYDMVDLYYYDPSVIEAFLPSIISGSYEIPIKIKDLNFKPDKSGQVTDGNNWLVLRADIEKAYNKLAEAKQNILRLRFSVENCEWTELGKELNTSADGARMRVSRAINSLIRILGGWRTYTDTDNIEVKEEEDDTRA*
Ga0104988_1092342	F029029	AGAAG	MTQEPREIKDLFKKDYSRAMDLRGNSIGDICVCGSELFTAIVAFEYGEICFYFLDGECVDCGSLVTLPTPIDDHGMDCD*