Scaffold Ga0104988_10918

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10918
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38689
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (40.74%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F007030	Metagenome / Metatranscriptome	359	Y
F009398	Metagenome / Metatranscriptome	318	N
F015720	Metagenome / Metatranscriptome	252	Y
F018171	Metagenome / Metatranscriptome	236	Y
F027822	Metagenome	193	N
F078616	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1091811	F015720	N/A	MKNTKTTLAGIGAILVAIGGTLKSIFDGDPSTSVDLTATIAAISAGIGLIMAKDAKDADSKP*
Ga0104988_1091825	F007030	AGGA	MNATKASSPQMADPFIPTEQPTQAGTRPSIHFSMYAYGGMSSACIMSWVDLTAKFAWSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQLDHDIEFDASDIIHMAELAHEHQATVCIPYPCRTVPPRPALRPKAEHLQALKHQVSDAECAAELVPITMFASGCLAIPRKCLIATLDALGGSGVQYPYKIDWCDDVRVERFPTLWMPFAMESRPGKLEYLSEDYAAAARMTLAGVQHFSMKPKMQLNHWGEYPYSFKPYAG*
Ga0104988_1091839	F078616	GGAGG	VREHIDAGVKAGWISFPAEVKARQMSRSLAQAVEAFDSGLAWRMWDNGASRDQIARAVGCSRRGVQAVIEHGRTNK*
Ga0104988_109185	F018171	N/A	MANTQGSKYIFGSPATLALYDAAGQLVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPSGTSVANALLAAALPDVNGTCVITGAPVIEVGGYVDALNAPGSPGSGPGGRWIYAGGGSIKTTQTGKATGTITLKRYSGMGVTITGAATSL*
Ga0104988_1091850	F027822	N/A	MNKLGQLYFDAAGGNHNAVVFITAFHAYCHAIDDLVDGDVPFTPEAFLDVMMQANSLYSTPFYIDNWFRLQPVIAQITSTYADSVAWEKSDEEWKRQTADVLRLCGNDMILQVAWIIGGYKHMRAISLKLREFAYHSQHS*
Ga0104988_109186	F006107	N/A	MNAVSLRAERAVVDYLTAADWSASGAGVPTCLTSYSHGLFTDPDEQDTMPDLPIVVQASSARPVQRFDTTCEVDISVEFQFSADDTSESQILSSMQVLDNLLEPLFDDGGASVLDAPEDDANGPFTAQFAVPNDFGGNTISNRSRNFARTFTIYCSATL*
Ga0104988_109187	F005024	GGAG	MDVDTSRFDAAMKAYLLTTQRDLHKAINARMFYLMVRLFVLVPPKSPSSERARIGDYLKKPLGDINRKSKKTGKRIGTARLLRRVHLIAQAKERAAGRRGLYGKAMKDAASAIYRRAIGSVGYLRSAVVKSIKLYNRGFTQYSKPKWVPLVKPPGYKAPKQPNAALVAMANQYGLPEENVAVHKGTKARGTQAAPGWNPEASVFMSAGIADNQYSRVQNIYNPAMQRALDDELAEMTNHMTEALLANGKVLADNGIDIK*
Ga0104988_109188	F009398	N/A	MTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVTDANTPVAGGFQDNVASRILVKFSDWKTFDSTLVSMDTTLYTLDQGTQFSRLQREDNGFIFLENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTK*