Scaffold Ga0104988_10914

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10914
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38466
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (87.72%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F026858	Metagenome / Metatranscriptome	196	Y
F028458	Metagenome	191	N
F041080	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1091429	F026858	AGG	MTHDNLLLDLTMREVEVIRMALRLQEDTHKRNDFPSLVLETQTLRSKIADAIIDNAKELTKA*
Ga0104988_1091432	F041080	GAGG	MNDTILHLAEELRVIADEISYNAIDTSSDYPKRGTIVKALPSQTRFKPKSVWVSLGNGTYKHLTGSKGLITTHERLNGYTEVVFEA*
Ga0104988_1091441	F001531	AGG	MNWQQIEPWEYVITSVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGDKDAKNLIYRSLRNHALDYCQKWKAKSVGYDVSDLYYYEADVVEALLPAVLRNEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAIKRLVNKLGGYRPFLDKDLPEPETEEPGEVVEGYDSSNHDEWHDEREDVND*
Ga0104988_1091442	F001515	N/A	MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNISKGYLITVDDLMSATRLYKKAKADELATN*
Ga0104988_1091444	F008808	GGA	MKNELNPCPECGQHFDNVFEATDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYAEQPEQIRSITQDTYMTLFTAETQPDVILDVIEDMIVGSSMVGIDDELKQLLEDGE*
Ga0104988_1091457	F028458	AGCAGG	MAKINKGTLAIGWCDNGNTDGKFTEGVVSVALQCSNNGIQLTHSMRVQGNQIGRQRQVLFDYWADQIKSDWLLWIDSDIVVSMEVVAKLWDVADKINRPVVSGTYFISKETEGTLAKPYPALFFDVDEQTIQHVHPLPHNEVIKVDSAGFGFVLMHKSIIPKMREKFPDQSMFAELEHVGDKYVGEDIVFFRKMQEAGIPLHAHTGALVKHIKRFSLDVGYYDMYWTLDMIKQKAQEKQQQG*