Scaffold Ga0104988_10913

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10913
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38389
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030020	Metagenome	186	Y
F045574	Metagenome	152	N
F085386	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1091327	F030020	N/A	MLRWLAVIALVGCNPVQRISNHANAIRTEAQALEEHGQAIGDPVVVAGAERIDGLAAGIHDELPNVTNKVPAWLSTLQWWGIAVAVVAVAFVLWNSGILSSVRIALGFLPRRKVAQAELALDTLDESRPEGDRELVAALRSDPEFDAAFRKARKRRKAQE*
Ga0104988_1091341	F085386	GGGGG	MNLFDEAEARRRRDAGMWLAAENKQELLATARGFAAFVAKQQGTVNADEVALMMAENGLDYTDLGNAAGSVFDGKFEWTGAVVQSRRPSTHGRLIRVWRWKGEAR*
Ga0104988_1091348	F045574	N/A	NLPFHLYVHVNNAALGPTMPDGTTRAIWHAVYCRPGQIVMAHVLLETGAEWCGVPLHMIGSEPDAFRVKPLANPDAPGDLQPWGAMGDHIEAVHLEYLEGMMAMGSGKGPGFCGTHTGIVIDWADGFSRYPQEHKPLNLIERSDGKYLLYPNNYIRLLDKHFTSFKKSDEMQHYRRGERVYWEV*