Scaffold Ga0104988_10896

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10896
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36852
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (81.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015703	Metagenome / Metatranscriptome	252	Y
F036141	Metagenome / Metatranscriptome	170	Y
F041720	Metagenome	159	Y
F048791	Metagenome / Metatranscriptome	147	Y
F057907	Metagenome / Metatranscriptome	135	Y
F069774	Metagenome	123	Y
F070878	Metagenome / Metatranscriptome	122	Y
F074495	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1089619	F015703	N/A	VKQYSNGFLDSLDEQLFEIKFDQYRNGRMVVECEQNPQNKGWKPSGLMVTEAKWWIYVFSAQAFIAVEVARLKKYLEINNQIPVKEFAKFSANPTKGYLLFPEDVSKLLSSELYD*
Ga0104988_108963	F069774	AGCAGG	MVRAFNTLKRDLKRQQDQLLMNHQDETTISGGDAATFQFHYLLIADTASMGASTTVSTAATFDANQGATGTADVYFEPRRDFYQAGRGF*
Ga0104988_1089635	F048791	AGGAG	MAINFSNANLTLAQVRTFVGELSDLDIGFDENDDISTDLVNGFVKEGFQKVVALSNRWPYYQTTYSLAVVTGIRPYTSFQQTQPTVIGSNPKGITDISQIISVVNSDTSFQGNALVYLDQARCESIWVGAQDQEGPPAYFSIWADQLNLWPKPDNNYSFTIRGFRNPSLTWMQNEGDPIDISPQLQLPLINYIMARIFQFQEDTEMANEYMRSFERAIAIIQGNLTAPSSNRQLIMSGGLQLTPYDWWWSDTPNMRVLPGSPYPLGVAL*
Ga0104988_1089636	F074495	AGGAG	MNKQTQGVGQGLAGTEPYGTVDGARHIGNGRADYHGQGVEIAPPSGIAYGGVHYKNGLCQAMNKKEEQCKAPKAKGTDYCVGHLNALKKMGEKQDAALDPKE*
Ga0104988_1089637	F070878	AGGAG	MATNNKFIVERTNVLAADVTVGVSYAALDSGDFGFYGKAGETYEFSARVVYTAAAATDGAAFSITASATPTQLAFVSEYNTDATTVVRTMGFAIDTPDHGTASVISSTGFNNAFVYGVITPSADGFIGVSGIAENASTIIAKGTLSTLSWKRVFVGDNE*
Ga0104988_108964	F041720	GGA	MAKTSRLFLSETQEAYLAWLLTPDDSKAPKTKKDWAAKYDVHINTLGLWEKNKVFKERWELGVKGLAQSPERTQALLDALYTKGVSGDVKSAELYLKATGFMQQIQTVNVNNVSSVKELSDDDLHSMILELSQKKQPTISITKVEEEE*
Ga0104988_1089648	F036141	AGGA	MEWVVPIAVALIGGPLVVVVQKLRDENTSQHAEARALLHRVADKVDKVDDKLDGHIAWHLTKPTRKKKSESQN*
Ga0104988_1089649	F057907	AGGA	MQCNSCSKEINTENDLKRKICFACHVKRITFNFVGAQYGKSNWNASTIKETQKMYEAMPNVEKVSSRKELI*