Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10893 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10893 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	36680
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (76.79%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36680

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (76.79%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003112	Metagenome / Metatranscriptome	506	N
F020886	Metagenome / Metatranscriptome	221	N
F039527	Metagenome / Metatranscriptome	163	N
F056556	Metagenome	137	N
F068578	Metagenome / Metatranscriptome	124	N
F068581	Metagenome	124	Y
F083891	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1089317	F003112	N/A	MKRIATWITVLGLRLLLTAKDYACFKEALKCAEDNNRISSGTKYIGAVKHLLSVNRSIKRMVDDGRDRDEVVGAVVHLAVSLKYLEGRGRES*
Ga0104988_1089318	F020886	GAGG	VSLDEVNDLKDRVATVSERLARMEERQVQLYNMVATSLSSYADVVNRISALEHLRTRMLTIAGAVGLICSMAWDIIKNRFHS*
Ga0104988_1089320	F068581	GGAGG	MKLDLNINEINTILACLGRAPYEAVFELVEKIRSQAKEQSEAK*
Ga0104988_1089336	F068578	GGA	MSTESIMDAINSLGTAVRELQEGLPVKDYTEPTIEDVATHASDVIRKIMNRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNVSSPDGSGETCIDHLERALVRAVFTLYKAKEGKIR*
Ga0104988_1089339	F056556	AGGAGG	MKKQIVTVSCQLPEWFEKHSLPRIKEASERWDANLVVIKPEKPIGLLAKMSLVDAVQNADRTVFVDSDVLISRECQNPFELFPRGHFYACADAPHGDQLHWGRANEMILSQAMLGSIKWTQGYFNTGVMVCDKQHAGAWGNFIYAPFAFPEQTFTNYRARALGYSIRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDNRAKWIEEMDKVLP*
Ga0104988_1089354	F039527	N/A	VENVLEETMKYYAEEEGELTFEQMVPGKYYRSGNDYGICEINQHASNKPKILTYLNRCGSCIGGNVLLFEVDMTDRMLAKLKERRDRTIGFIDEMGTW*
Ga0104988_1089356	F083891	GGAGG	MSQSIECPNCKCEVPLALFASRIGKVRSEAKAKASIANGKKGGAPKGNRNWAGKELPVVSFRPSKLD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10893

Overview

Ecosystem & Geography

Associated Families

Sequences