Scaffold Ga0104988_10892

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10892
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36513
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (50.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F021985	Metagenome / Metatranscriptome	216	Y
F040538	Metagenome	161	Y
F070028	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1089211	F070028	N/A	MLTPDEQQIFALQMYDRVVILADLMVEHWMEGNANPPKELIDAYFDAVDAASIAINGNRLHESVVTPNSEFYEEIHAKFGLQNVKKNLDTTPDLF*
Ga0104988_1089233	F021985	N/A	VQNDDSKTTTHLYAVLFREAKIIVSKYEEYLRDKITSKELAQKMMNLRDAIQRIENTFKNS*
Ga0104988_1089242	F012760	AGGAG	MKISELVYEVRTLARKEEDPAKRDLFYQCAKSLEILGNIAKIADLAVAEHSSAEKPHIDKDGNEKYYVDSQTLNMLNEHIDALIHYGFMEKDDRWPYSNEGIKLFVSKYFKSQIVKDSKIE*
Ga0104988_1089245	F040538	AGGA	MEITTVDRPTKIQRVFDFMRSGRPLTAGAARKQFRVQNMRATMHDLREAFDRFDMNYTVVREIRNGRSYYRVARNRSR*