Scaffold Ga0104988_10886

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10886
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36014
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006660	Metagenome	367	Y
F011669	Metagenome	288	Y
F037222	Metagenome	168	Y
F049420	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1088617	F006660	GGA	MSFQTIFEISQSISVQNRRTVGQQVSRSGQVRVAEYLTSVPWSFTVRPHAYLYYPQVRGVIQAIDNKDRQLPETITFASSLLSWFDDYKGGLTSGQAAALTLAAVPAANATTISVGNLPSVSAGTVVFAAGDFLQLGVYPYKVTAEVLRGGGSTVSVTLHRPVIGTPTTGTLTAVGSACTFYLLAAQCPTYTLNPMTSGAFVQWDGDFVFIEDITG*
Ga0104988_1088635	F011669	GAGG	MDDDDDYELANWMHLIATCILVLFALVGIAGLAGFVWGML*
Ga0104988_1088647	F049420	AGGA	MALTNFKKEEIFEGKSDLLCSVDGCTSRWSVRIDGQLPKCSHHQWQQPKYGNTKTYQQYLADKNSPGVPPVSTWYNKGAW*
Ga0104988_1088649	F037222	N/A	MDTITATPTSLKHLNWLETLTQTYAEMALAGGDQAQKDGRREYLVQRFVELEQDFPGITAIIHQKIRAMK*