Scaffold Ga0104988_10884

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10884
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35859
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (75.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022156	Metagenome / Metatranscriptome	215	Y
F034115	Metagenome / Metatranscriptome	175	Y
F036031	Metagenome	171	Y
F047577	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1088411	F034115	N/A	MKEFAEVYLELNRAIKRLHEAKLKQDHVNAYLIGCDVTDLAQELEDVLQRDANIQ*
Ga0104988_1088428	F047577	N/A	MFQTAFQVNAFQNNAFQISVIPPEPSVVDTHDGFTPEEVRRARNLDRKIREKQLALYKAQEQAKLRRKQQLRDAIDPPKIVAKAKRNKLQSIQEVKADIPSVDTTELEQSIAYLENQRSKLARAVELRKQQAFISARLAFLEAQRQAELDDEHAIVMLLQ*
Ga0104988_1088444	F036031	AGGA	MERIEVNVQTGEQKIVQLTAEEIAQAEAQYQEWLASQPTKEEQIAKLQEQIDALKGA*
Ga0104988_1088450	F022156	N/A	MANEIEKEIVKQAIKEWLNEKVAQFGWFSIRTIFYVFVAGLGYAYLVTHGWSLPK*