Scaffold Ga0104988_10883

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10883
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35828
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (76.92%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F034856	Metagenome / Metatranscriptome	173	Y
F045716	Metagenome / Metatranscriptome	152	N
F047017	Metagenome	150	Y
F057144	Metagenome / Metatranscriptome	136	N
F057318	Metagenome / Metatranscriptome	136	Y
F067678	Metagenome / Metatranscriptome	125	N
F079990	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1088310	F034856	N/A	LIDCRAGAILPYGESIRRTMANYYFTPPTIDETPAGGPPLFDRYKLNRGISVLRTNGVYSSFRYPSQTQILAAEEFYMGGTKNLIDQTTRDALVAQGYSAYIVPA*
Ga0104988_1088312	F067678	AGAAGG	MATNYYDDDEDNDTTTDVVGQLRKVNRTLEKRAKELEQELAGLKSQTRQRTVKDVLQAKGLNPKIAALIPQDIEPTDEALGKWVEDFGDVFGIQTPTEEKPVEKSPEIKAQARINNMVATGTAPDIDEDAFAKIANAKSKEDLDILLGLN*
Ga0104988_1088314	F047017	AGGAG	MVDERDKIRQRLGLSPLDAAPGFPANPFVNSTPASTTKPTTANPAIATWIVNLLKNEPQLKAIYDAVRNPATGEFIYSADAIADMITSSDWYLSKGPTVAGNIAGRQRYGEKWYQDKVNQYKVTVSGIANGMGINASDPTVATYLSSLAEASFLNGWDSDYIENTIISNADVVSKASGGLYQSKIDDIRSYGKLMGVDVSQTTANGYLNRLIGTVTPQGLRVKTTAEAIKKEIADQQALLYPFFSDDFAAGRTLWDVTSLQRKKWADLLEVDEDSLDWNDPLWKDGKIFTMVDEKTGKVVQRPAWDAEKLIKADERWQYTENGTRTYEGLGAAMLRRMQFVR*
Ga0104988_1088317	F057318	GGAGG	MAKKASENFEVSATGGAGTSGQPARYAAGIDNAQDFYDMQTSAPMAGQNPAVARVPSPSGNRGFRTGGQTPFVPLTAPTQRIDEDVRMGATEGLDSMYATDQTANGEDADRMRQALPYLATLAELPTTSNAYRNYVRYLKSIL*
Ga0104988_1088318	F079990	GGAGG	MKKSLSGGKKPKNQGSAGKAPTQKPMMAKKASSKGGKTYFSGNPSGTRGSRSK*
Ga0104988_1088337	F001515	GAG	LAKNSSFDLDFGYGRKGEQLVEELLTEGRTVEVKRDRKWYKTNNLYIETSCYFKKTEAWADSGLSVTEASYWAFVLQVSVIMVPTPVLRYAVQNFGREITCEIPPNLSKGYLITVDDLMTATRKYNEEPVDG*
Ga0104988_1088344	F045716	AGGAG	MSENTPIQINFKTKKDGMLINLRAADGAELDLLMTQISERLAALVDLEKTVEGMAVVKNAFPNAQVVGSAPTATPSAGTPECACGGGAMRFVPAGIAKSTGRPYKAFYACPKPQGQACQNKVPA*
Ga0104988_108838	F057144	AGAAGG	MTAIVGVQGKGWAVLAADSMTTYTDKPYVAKGCEKIVKVGEYLVAVAGDAIAGDILNNLWQPPKVIKTQDSDRFMMIRVLPSIKQTLTEAGYDPAPKNKNDDDAGWDALICFNGKIYQVSDDYGYMRDDKGLYGIGAGGGIALGALSALDAERRTHTKAASAAKKAINIAIQYNIWCGGPVNIKTQFTR*