Scaffold Ga0104988_10882

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10882
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35781
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F020531	Metagenome	223	Y
F024770	Metagenome / Metatranscriptome	204	Y
F027488	Metagenome	194	N
F041730	Metagenome	159	Y
F044450	Metagenome / Metatranscriptome	154	N
F053995	Metagenome / Metatranscriptome	140	N
F056549	Metagenome	137	Y
F066709	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_108821	F053995	N/A	KMALVNRLSKGEVAVGALQVGDNDTVYGIEFGTVSIDPASINATTRGGTTFTLTGAATTDIIIVNPPSDLNDDLIYCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTA*
Ga0104988_1088215	F008607	AGG	MDAIYTKVAEFMTDSVVFTAKASVDKYNKPTFANTSTTVTGRLIYDTVKSKDVQGVEVVDIGRFITYGPATSITVGHRMVVGADTFTINGVDNIADENGAHHTVIRFGR*
Ga0104988_1088216	F019308	N/A	MAKSSFKLDLFGDEELVKALKAGKENTPQAIAQAIWEEANVIFAKSQILVPVDTGVLRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIEKGHRG*
Ga0104988_108822	F044450	N/A	MKAQILKSMIVEGRKLVAGDIVEVKGWRHAKSLANNRYIKLIEDDVVEEKVAEATKPKATKKTKEVAE*
Ga0104988_108823	F024770	AGGAG	MAVSHARVSVGTTATKLTSDYDGKDGQTINVQNPAGGADVFLGGEGVTTTSYGYLLKADTSFSVELQDDEKLYGVVASSTQTVNIIRQGT*
Ga0104988_1088238	F027488	GGAGG	VSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLIWKKLPNTVGEEQSLGEVELPNSDTPNSPTLEPQLPNATPYHPSYTSVLSTTKSDETAVAVVALSEAVARRWWEKQRVKPLGKGAWHSLLQITKAAEARGYSEQQIEQALDYIGTVPTMRQMDLVLRGVGVKTKHEQSAIRAIDLAEKFRNDSI*
Ga0104988_1088239	F020531	GAG	MTLSDLAMLLGFVGIYDLRIQVDELKVRAWAESLDSDVPLDEAKKIVSWHYSNFDTAITPSHINREWRRRLADARERERSRLMSLEFEENEKKKASPEFVAQIKKELLEKLRGKDAPLEKDNGTVAPDL*
Ga0104988_108824	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAAAYVSVDAYQALLARYNGAENIRVLVVDADEKADDAGTYATDASKAAGALANYNTNQLMMMGV*
Ga0104988_1088249	F066709	GGA	MSRSDWDLDLRFGQEGEVIVNSLLTAPIETVEVKRDRRWKETGNLYIETECWSNVLDCWYASGISTSKASHWSFILEDSVLTVPTERVSKAVAFYGVRREMNRPEYSTKGFTITVADLLKVTSLHP*
Ga0104988_108825	F056549	GGAG	MAEPYVPIARYNTANTLLTDLEVATNEASTNTALLSTAVSNALTSKQTAENLVANGFDLFFLVGA*