Scaffold Ga0104988_10881

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10881
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35766
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (37.50%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F024040	Metagenome / Metatranscriptome	207	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F039497	Metagenome / Metatranscriptome	163	N
F048121	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F066486	Metagenome / Metatranscriptome	126	Y
F071967	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1088113	F071967	N/A	MNNEGEALAICSEFADEYGVDIEDGESIVVYMKSEYINELKNMLERKNYKLKSFKVYGDEALVNFIPKK*
Ga0104988_1088130	F039497	N/A	MSEENFNCHAGNQLRQVLYKDILRYAHESDMTAYQVIGVLESLKFDLLNAMVESGKDNEDEI*
Ga0104988_1088136	F024040	N/A	MNIYVSGYNWSAKVDIDTKKVNKSDWYNEACTRAVESVLDQEENDGVELKIEDYDNFGLGVILLTWDEKNIKNEDEHRVLLTSNVLANAGRWEEYKEVKAYEDKCKEEGL*
Ga0104988_1088143	F048123	GAG	MIKPRFDFSKGKLISMDGEIIEFADSKVVDKYHYQVEEIMSLFNLKRGEYLITDESIIGDFGKENINKTALQKFKKKYGFSLTNKTNISSIAERMYNFRPF*
Ga0104988_1088144	F034827	N/A	MKYTITSRDKEAMVDFDSVKEGEVFSFFDPESVQRGNHSVFMKIKNGTNNIVNLDDGKVFNFSDKKRNTINDPDEQQGDKVYKLNAKINIVV*
Ga0104988_1088145	F030670	N/A	MKVIRYIKELEDEFGKPLDKWAVYEEQITPKGNWVFKDAKIVKTFTTPYHARNWMENDSKRTD*
Ga0104988_1088150	F027756	GGAGG	MKLEDLVDRKILYLNYPINKYAIQEGKVTEISPAKMCMKINSDWHLVSNIRVIELFSEDERPKLGFGLTKDEKKAK*
Ga0104988_1088151	F032548	N/A	MKRRQNKDMEKAIKLLEELVNQADEDCPHDCRTMHFNNALEEASEFVKEYKNTK*
Ga0104988_1088152	F036564	AGGAG	MKLGRVCLDLNYIVDMDNQEMVERAVECLYEDLMQGVKYGNLSNWIDVIEDKNAKEDMIPEFLLEKENE*
Ga0104988_1088164	F016774	GAGG	MPPKKSNKIEFLTEHLASLNHWRDELLKLDKTYFHKDLEKERTIRNMINKYLDDVLEYNKKCKEKPKK*
Ga0104988_1088167	F048121	N/A	MNTTQTQYTWSVKATSGQVVVAPKSYPTLRGAKIASKRFANKTGGQVVSVSAK*
Ga0104988_1088176	F066486	N/A	MKKNTNKLSKNDPYYIKVGKFKKKNVYDAKIDMGDKIKDLFLNLGKEVITEDQYINIGFNYTLIKGLGYLKKK*
Ga0104988_1088178	F026210	GGAG	MNANPLDYDAKYPKTADTSINDKAKIEIMERNIGRQVCFQIQDTQFCGKITSVPNSEHYCVLVGESWDWYIREEAIHFVENIY*
Ga0104988_1088179	F025679	N/A	MTKTFKIGEYAVGGKIRVSIPKNLTNIKIDVVDYNKGNILSQYIYYSFDRISIERDLWQITTSYWTDQITSWITKNWKVELYHKTPWYNV*