Scaffold Ga0104988_10880

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10880
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35740
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (83.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010315	Metagenome	305	Y
F012570	Metagenome	279	Y
F044373	Metagenome / Metatranscriptome	154	Y
F093536	Metagenome	106	Y
F095133	Metagenome	105	Y
F097262	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1088011	F097262	AGGCGG	MKCMTCNERTYVVNVIKMAGGLRRQRKCKSCGAGAYSAEVWLKATANGAEPVYTKEEAALIKKKAVNARRANEDRRKKDAS*
Ga0104988_1088012	F044373	AGGAG	MLRDGYFIKEEPPKIGAHYTPQFYQKPATPEERFVQDVMLGIMPYKESSLTKLLGRLLRI
Ga0104988_1088048	F093536	GGAG	MKVKSDNFTSMKGHVADGCIVVAPSGKEFTLKNTLKGWILNGPDGLPCSGNLPSAFDVEYFVVNGLQTH*
Ga0104988_1088049	F010315	GGAG	MTNIFEQFQGADLDRLAECIKAVKAAGLTIDKYTQAGVNQNSGNVWIWGECWAGCVYYSIGFDVQWSYSCPECGEEHDFDTYQALENYASEYDYDRCETCAPETVETETKGD*
Ga0104988_1088050	F012570	AGGGGG	MQTLHIDGTTYRVKFDRDPLELAKAARKPWKPKKPKDIRTFPTWTPAVSTADYIRRFDNLNCLQSVDYFGASAETAAQYDPSIPLFEVCE*
Ga0104988_1088052	F095133	AGAAGG	MNNARDDARAVAGAKNRPYPHYLERVELLLDDVMFRLWVDFEPADRAVGVNATAWIVHAHVGDSPADIADYLNDATINRLEAEAADYLSGGD*