Scaffold Ga0104988_10879

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10879
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35713
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (81.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F046894	Metagenome	150	N
F046896	Metagenome / Metatranscriptome	150	N
F060717	Metagenome / Metatranscriptome	132	N
F078379	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1087919	F004362	GGA	MAKDHLDERLQNWAWWLSYGIVIPQPETTCRSFEKNYIPELGNLYAPEEPHYEPDHKDGELIEDCVKALPLELRKILKARYVSHPYASQNQLAHHLRISPKRFETDLQNAKKRLQDQLDKRAKSKDYADMLKVQSTKDNREWDFRDIQQWDE*
Ga0104988_1087930	F078379	GGA	VVDFTEENNGESWVEICEVFYDKNHEPYMYTARGVGVVGETTEEIKDTLYKMLDCLNKPVLMKADFNNNIKVWLDEDPSQDS*
Ga0104988_1087938	F046894	GGGGG	MNKYDYWLESGADQQCMADQQEYVWSEYMKPGKPCDPMDLDNFQEYLLEATASHAGFEKWENLRQYADRGEWEKFGRAIYYLVHDHIENKLISEEE*
Ga0104988_1087940	F060717	AGG	VKLADEQPDNVCFDCGEKWGLRPLKNGESHRIWIDQCDVCSKLTAVADASEYGYMKEGWDGNKVVS*
Ga0104988_108795	F046896	AGGA	MNKVDRAKIYLQDDFFVELLEAHKEVYKSYIFGSAEHDVEGRERALVKLRAIEEFEASIRSIADQGEIEKKRIKVF*