Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10878 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10878 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	35655
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (78.69%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

35655

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (78.69%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012105	Metagenome	283	N
F020535	Metagenome / Metatranscriptome	223	N
F036604	Metagenome	169	Y
F045072	Metagenome / Metatranscriptome	153	N
F088539	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1087815	F020535	AGGAG	MAAGTPFTGKSMTFKTGASPTEVDHTGKWELTIGGASAKYATNSTGGWRKTTVGVGEWSGTVTVMLHAGGAQPLARGDEVAAQFHADSDDYISGTIIITEVGPITFDADSGDPVAIDYAFNGQGAPSKSGTAFDIIA*
Ga0104988_1087828	F036604	AGGGGG	MTLITTAEELAEAIISDPERVAACLGRINRFGGQVPHCTVLRHSLHVFERIDADVDSSDAARLWALLHDCHEILTGDVVRPYVNARLRMDQSAIDAVIVRRLPLLVPQPESMSWESVAAADRAVGEWEMLEIRQGKAPYFLYQFPAKSWADLVRELIGGAA*
Ga0104988_1087829	F012105	GGGGG	VIPLAIRRHSLQDLTLGQSVVLAVPASEERQIRRAVGRLNAERTDGLRLKTLRTPDGLRVWLVESVEVADCPEWQTGKSRRFPGRDPVAVGKAVVKLNEWARVMRRPYRFRVVVRDGVPIVLKLPKNKTIRIRREAELLRVVKAVERLRAGQGTVVRGVERCDIVRAKWRLKKRGIRFVVRCIGESVWNVERVTE*
Ga0104988_108784	F045072	N/A	MARSAAERLALFESIRDKVEGALASGAPVVSYTVDGQMVQKEPTSTWLAELDARIADLRRQASGGMSRSRNLVRFRNV*
Ga0104988_1087849	F088539	GGA	VRYTEYDCQDPWHDVDNAATHATDFKAFREQYPRRIQATPEQTARADALVASWRAETDRTLQRIEAMQRHNREREAVSVVLTADLVRAFLEGLR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10878

Overview

Ecosystem & Geography

Associated Families

Sequences