Scaffold Ga0104988_10874

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10874
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35535
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (63.79%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F014487	Metagenome / Metatranscriptome	262	Y
F023059	Metagenome	211	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F027777	Metagenome / Metatranscriptome	193	N
F033350	Metagenome	177	N
F081046	Metagenome	114	N
F093506	Metagenome	106	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1087412	F023585	AGGA	MSVKRLKLVDEFHGIVSKRLKELFKDFDHARRENYKDIISHLDYSHRITKELLDRAKKYQKRDMEDKKK*
Ga0104988_1087414	F033350	GGAGG	MSVDVEVPRVKWSMLEWKTPEEKPKNDERVLMDCGGEVVVGRFVDGSFVSRSWGHSESDVRLWASWPKAPKW*
Ga0104988_1087415	F023833	AGGA	MKSHSDQVQDIINDAMRKAAALERERCAELVQKLADGTEDQVIQDILNEVVVALRRLTDER*
Ga0104988_1087417	F027777	AGGA	MSEELPTFWYEEPANKKLPNESTDEWVVRVFGAFPDTEFDQRNDFRSLNLPVSGSREDRESLGDYDYNQQPIRRMK*
Ga0104988_1087419	F005702	GAGG	VIIFLVVFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELVPPSKNWVGRN*
Ga0104988_108742	F007164	AGGA	MSEKQIGMELQRTVKQLEKAKENAIQQMGEAIGLAADAGDILLSARTEGLDLDAIQTYAQINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPSQWTPAQRTQFLEEARPIVEAYKEAGGEL*
Ga0104988_1087420	F005846	N/A	MTSSIHPARPQASAVPANHEEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHKLMADMILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPDNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVVWEGFVMKALDDGKYPFITNPNYCSPAWQKQRIRW*
Ga0104988_1087424	F011284	AGTAG	MTSEQSVEKTTQKHFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0104988_1087426	F023059	AGTAGG	MWEAILASLAGVIGIIAWWTKNRAKTRKERDDEEIAYKRRLRDTEVDAWIHRR*
Ga0104988_1087427	F012113	N/A	MEQILTFVQSQDVFAWVGALVALLSAVIAVASLIPGEEPEATLTKIVSFLSKFSRK*
Ga0104988_1087431	F093506	N/A	MATTILSNISSFDYEPDIITDNGRDGITAFQFSVVGSFSSLNSNFSLDQVLVGVPDQPPGNFRVVRRNMSHIAGDTSSGLYRLQVSAEGGTGDNSLYILETSYQYQREIVTGFVQTPAQDIAINYICEWLSPTVTITTNSQTEDVTAVQDRVRAFVSSQQVQIIRNKPDKTVIIGTVEYPVFGPGIDVNAINIVGSSVENAGGLFRVRASATKGQMQLSV*
Ga0104988_1087436	F104721	N/A	MQEKILYTRNIKLASTLATFGIPFREKEPMAVIEDADDGNRRSVTFFFSDLPSGLGGKIVDMWEKGWSAITNYDDPLAYCRAVLENRERLLDAMNNATPLVKKQFGKATLLVSKNASPELRKKLSKYL*
Ga0104988_1087441	F014487	N/A	MPLLLITLFLCSCSPRHTDNNPLPRYSDMSAAEDAGRAK*
Ga0104988_1087447	F081046	GAG	MIAKTIKYSQRLGDIIRCLPACKYLADQGHEVFFDCLPQYHGIFEMVSYVKVGNKGDVIDLEIWPNKYQEYRFSGKTWTEFVYAHQEINKADPKDILFDKLDDAPAKGLPETYNMVAPFGISQGHKRDPLQIIVEARKKCGGDNFFVLCQGTEIKGLQTYTASSIPELARAIRGAEEFWSIDSGQMAIAAGVRKDKKVVYFPQTIEPFAKDNIFIWDSVELG*
Ga0104988_1087450	F003049	GGA	MKNAKQIIGCRKAKKGENTKGLGMITFGKSRTDKTRYVLVDITYDEKAGKELYEAGMIALRHDPEAVIEYAIKKALSEMAKCKK*
Ga0104988_108746	F024265	AGTAG	MNECYVTAEAKANGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0104988_108749	F010463	AGAAG	VNHPQELVLAATIHRVKMCEDKLREFEQMVTTLTATMAQNRAELASKGLEKFVIGVTTPLDIPKELVPTIGKGGARRNREYSTVKKRWTLWKHQLESGMSMSELAKAWGVHPTTILFAKSRNFIVRKAKGGSR*