Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10873 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10873 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	35518
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (67.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35518

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (67.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004405	Metagenome / Metatranscriptome	439	Y
F017265	Metagenome / Metatranscriptome	241	N
F041188	Metagenome / Metatranscriptome	160	N
F082150	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1087313	F041188	GGAG	MNLTMDQLKDKTVMALKAYAKKNNIELFESNTKLEILEILASWIPPEVTEETAEKAGKNKDLTNKIALHSDRNLHMDGLGALSVGYNIVSKEASEKWLTHRLVRIAQPEEVASYYAKV*
Ga0104988_1087315	F004405	GGAG	MDACEVTDFMFPMKADIYFPILAQGGYGQPTKNWVYDRTITCNATSVGGLGSEDVKPDNFLKYENKLIARTKEDPRLSSNNANNATTNILITNIRDASDTIIYKETAGARSGKGTIYEVATVEPFTGPFGYTEYYKMLWRRAENQTVGD*
Ga0104988_1087316	F017265	AGG	VIARTSTTSFTKQMNNIINYSLGFLEGVDRGKKIFFDRLGKGAIQALAQYIDVQARANPKALHHVYEWNQVSSPSARLFNLDYTVSNLGLSVNSTFKQSRSVSENMTTPFYNKAKIMEEGIPVTITPTKSKVLKFNGPNGEIFTSRPIKVENPGGDSVVGGFESAFDEFMTRYFKQSFLRASGVYDYIKKPTLYKKNFKSGSIAGRSKGIDTGFKWITNATIGVE*
Ga0104988_1087325	F082150	GGAGG	MSLDWQNYEIQKSKQSDNTISTAVDAAKTAEAIGIVGAAQVAARGGVNAQGYFNDVPAYQQLTANERKSVTLANGHIDSMGMLAILNRKEAEYFGRSSDSGVIKATAPSSVSITATPPAPEPEMFSARMFEASPPVKTATLDIILFDEESVPTDGMFDQIFENIGGQELISITRSDIVNGQKISYQPIKNLSAIQQRYNPNNILSLQQTADKFFAGFSIKLEDKIPETGNGTNGENIYLNATGDLIIELINVNPDEQVETQISVSGTIYEADLGDYTS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10873

Overview

Ecosystem & Geography

Associated Families

Sequences