Scaffold Ga0104988_10851

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10851
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33719
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (67.80%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F014488	Metagenome	262	Y
F023585	Metagenome	209	Y
F025739	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1085114	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLKELFKDFDHAKRENYKDIISHLDYSHRITKELLDRAKKYQKIALEARK*
Ga0104988_1085130	F025739	AGG	LLGGLKIVQRPAGKEMMKKLLTNAVCEIRKWILGFIAGSLISGCATTRPYDLGQVPNQDSISDFIMRWDKLDRTHATQEEYRELYGQTLKALSRSLEETERYKSRLEAQ*
Ga0104988_1085131	F012113	N/A	MNQLLTFIQSQDIFAWVGALVALLSAVVAVASLIPGDEPEATLTKIVTLLSKFSRK*
Ga0104988_108514	F014488	GGA	MNPGNQDPADSILASYTPDIASEIDTMEDVVRERLSKIKGMNPAISLDELAKLAAQVIQDTIQAEFSGPLLRTKRDDTLDEALLALATNRSPESLTSIARKYINPLTGKPYTRAALSARLSELSQRTGLVLRVQRSQRVREIYKDRALRIHQRRRQECPKWPKGAWEKGIKKTVGRGKR*