Scaffold Ga0104988_10842

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10842
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33213
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (18.97%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Associated Families: 17

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F001883	Metagenome / Metatranscriptome	622	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F004451	Metagenome / Metatranscriptome	437	N
F006463	Metagenome / Metatranscriptome	372	N
F008079	Metagenome / Metatranscriptome	339	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F012974	Metagenome / Metatranscriptome	275	N
F015420	Metagenome / Metatranscriptome	255	Y
F029102	Metagenome / Metatranscriptome	189	N
F034772	Metagenome / Metatranscriptome	174	Y
F034842	Metagenome	173	Y
F045550	Metagenome / Metatranscriptome	152	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_108421	F045550	N/A	LALILSSIEIMSINENYKIVKGIDLWQSAKLLFARAKEVKDNINKLK*
Ga0104988_1084224	F012974	N/A	MFTQAEQVIIQEVANLPEKEQSYKINLIKLKRIKDRIVGYEKECFCSSVRRKIWYKDFTQWYETFT*
Ga0104988_1084225	F004451	AGGA	MRPLLDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDVGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPILMDDDTDLWDKIREDMQYQNNMAVIETYRGSITDRIKLIVFQTYFDKGYSTARAMSEYFKIPVTSAHYWIQEIKNDLKQLKDEN*
Ga0104988_1084226	F008079	N/A	MKIKDEFIGVKVSHKGNNVNVSADNYTFCESIGLGYMFEEPTVSQPKVIKYKAIKPPIPEPEPEVTDEDGTEAE*
Ga0104988_1084233	F034842	N/A	MISYQSIVDKITAFYNNHLQVKKVGSDFKEQMVNFATKDEKYPIVYVVPTGVTPYENVSIFNLEIYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNISVVIPSWTNCPIPKKIYTAYSQAIQWLELFPQNTITFFCNGVQFDVQTTVLSGSITDFVEACNNNLDGSNFTQYGTYFDNGDDRVRLEIPYHVYNNLCANGEVTLKISVI
Ga0104988_1084234	F001883	AGG	MANILKRIVRNDIVQNNGTLVESIRINAKVTGFGSLEIEIIAMYYFIFLNNGAHLWNDGVIVPRDWVATFTRELASAGITNEIYSQYVEWISKNYPILEVAEILQSDQRLTYTFYALDPPAGFQQGFPLYV*
Ga0104988_1084243	F029102	N/A	MKHSGVLSFLVFGFGYLTGISLLFEPALYLKFEGCLAISYFTFLLVSEIEEKQ*
Ga0104988_1084246	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYTCSETGDTIRITTLDSIPVIIHDSIVWEKFISTKDTIIKYNTVYVPKTRLDKKIEYRLKVKTIYKDRIVEKAKAKATTPRTRGNLNLLFVGVAIGLLLSYLFKFARERYLF*
Ga0104988_1084248	F071222	N/A	MDNQKIMEIIFAEEAELLDQAVELKDTFGANDDATKRAYSKWVTITNLIDRINEETN*
Ga0104988_1084249	F015420	N/A	MKRLINYFTPVGAEQKAFAIAMFIVTSVTLSILFLFTFLELIL*
Ga0104988_108425	F009004	N/A	MKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLVTFLDDEQLQEVQNLFNHFKK*
Ga0104988_1084250	F004234	N/A	MNFIDLHKRDNTYFSNWTTDYDSTVYIAGTIEPFTYHAEENDNEWTSLFILNNEELNLLKSKL*
Ga0104988_1084252	F003327	N/A	MTEFTQLAIEVQNAIANGEYTHQKYLRFREWYFKNYEGSKRNAVRDFAMFDLMYGLDVPIKNNDNEDI*
Ga0104988_1084253	F003299	N/A	MKIYKVVFKTFDYWGGPIKLVTRIVEAYDADHVKQLIQKNDDLIILIEPV*
Ga0104988_108426	F034772	N/A	MKNLINYFTPTTEEHKSFLRHFLGTLTTFIVFGGMFYCLMYLKAL*
Ga0104988_108427	F009958	N/A	MKNRNLEIHNREWNLNYEFTGWQYSIAGTWEFNDYDEVSEYAFIELDVEISQKWIIETDDHLQPHVLGVRLLEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYYEL*
Ga0104988_108428	F006463	N/A	MNKGTIYEQMDWWQRQWRGSFDLMLYLEICRIKKNEQTKFKEMKRFKATFKTWAYVGAPMIIETRIVEAYDVQHVKNLIQKNDDIIIEIKQIEK*