Scaffold Ga0104988_10811

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10811
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31188
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (71.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012212	Metagenome / Metatranscriptome	282	Y
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F051705	Metagenome	143	N
F052463	Metagenome	142	N
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1081114	F039985	AGGA	MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGTGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNECDKAAGDFGGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGADEFEPEPAPVRKAAKPAPAPVMDDEEFF*
Ga0104988_1081117	F044360	AGG	MATKKLTDRDVFPSDLFKVFEHSLMVEMETEKMEHERVWGIDRVIDLVDAEFRRKFNAQRERIWEASRARDEERLEKAIRGMIAAYKALTRWATEADIEQMPKIDCMEYRMGDGSLMVIVRNKQMATWYEQFRKEPNPRSVWTLAELEVVMNGPTLKQVREIKAALPGSTMVPVEAQGSSGFEDMENDIDISKPFKGGKMFDTKAAERDKNERRK*
Ga0104988_1081118	F052463	GGAGG	MPGNPKVRADLALLEDIDDELILSMFEDGRSKADICRGLGIGRRALETWIADNDYEPIITRARVEAASHLACETLAIADGMDIDNAQRDVQRIRTRQWLAERWDRKTYGTEKAQAVNISIQGLRMEALRHVEVVEQLSTDRMPKLSTE*
Ga0104988_1081143	F012212	AGG	MDQIVSAESPWPGTETKTVLVCRIPKKEEDKKMGANEFTDKDGRICRWVVVNKK*
Ga0104988_108115	F051705	GAGG	MQITATFQDEEEAIKAIHSEYAWQALREINELLRQNRKHGLPCEDAVFQIQASVNDALAMIYPD*
Ga0104988_108117	F079788	GGAG	MDNDDDEIESWASLVLGLIAWIFFVIGIVAVAVAICMAWGYYTYEPVCGSVVSRFTEECRLP*
Ga0104988_108118	F027776	GGTGG	MMNPLEIEIKKTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGTETAEKRLVAELEILRGELKSLQTELAYAKAN*