Scaffold Ga0104988_10802

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10802
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30432
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.22%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F003267	Metagenome / Metatranscriptome	496	N
F003459	Metagenome	485	N
F006105	Metagenome / Metatranscriptome	381	Y
F011581	Metagenome / Metatranscriptome	289	N
F020667	Metagenome	222	Y
F021095	Metagenome	220	N
F088549	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1080211	F003459	N/A	MNHLVTIPKSDISKQDIADIAAGLILRIKEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAIKHGKTFSAFGAEIQIKEGALTPDYQHDQVWSDLQASMKAREELLKMAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFKTT*
Ga0104988_1080216	F011581	N/A	MTYHSTRPAKALTNALERLMIAISPADLEQNHALLCEYRRACELLGYDPAKAQWAGIHEVSASQLPDDQDHTVCYYPLLNPEE*
Ga0104988_1080221	F088549	N/A	MATFRKYEFAIYADFRTIYDAEASPNTCVELGHVNPDNPKAFCVDILWEGEEPSYWVRHQVWPTPCGVHSFLGWDAQYEADYQEFATPQSK*
Ga0104988_1080224	F001129	N/A	MPTPILQQILGQGGTMQFIDAAVSGANFDFIVVNTAATFTTLTGTGGENLLTAYSMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL*
Ga0104988_1080225	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSASVSLTRFVESRDDRTAGWVATLSFQIPYSHSVCEIPS*
Ga0104988_1080229	F006105	AGG	VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNSTTDFTLLKSANLSQYTNRYDKFSLAVGSLETGSYRYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTFANSIQYTVFGASDEGVFDQTFDQSFA*
Ga0104988_1080236	F020667	N/A	MSVTLIAYPTANFIDDLAAWNNFNARATADGADAVEAACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPNNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSSGYVYGVVDAAGFTDILNQGGGWFQAPWWRLGPSIYVKKMVDLIFTEAGFRYSSSFFNSSLFNKLVIPYAAGTMPINLSGSNILAQSTGNTANFAELVEQKISFSKDTPAPYYDNGGYWVASSSTFVAPSVDTRWNVRVSFTLSGSVASTNNNICRMAIRNPASGGNWATVVNFSLKKNVISVIDFANVTIPAFATANIQFLVEWDGIGGFTQNFTILSGATIQWTCLENPQSIGALDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSVVDWSQKSDENAEQVLTNGDPNAYTNIVFKYKDMDDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTIKPLQTGYRLAQYNLIEGQTEWAYQYGVSSTVSGNVALSSGILKMPFVSHIDNPYAPSVDLAFGQPRLVYYNAVNASGNPYNYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFVATSTTPVANNPAALYNGPIDTDPVDPGYEPPINPELPSEG*
Ga0104988_1080237	F021095	N/A	MSITVLSGSPLVATPVFNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVSPTKPSLTQTGFVDHAGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSVSPYFRIGSSFSVVRPLTTPRAFTVYQGGSNFLAINATKFEAVSPNDTYLVSGQVNYKGTDYNFAVTPSLSGTTDFNIQRFACGPANLSGTITALSGAVEGDSYTVRFISNTGSQSAGNVVTFTFGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL*
Ga0104988_1080243	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKEILDNSLVAPKIKVVVTRTNAWEQATLTEMYKASQTEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFVITF*