Scaffold Ga0104988_10801

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10801
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30345
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (78.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005703	Metagenome / Metatranscriptome	392	Y
F016392	Metagenome	247	Y
F026857	Metagenome	196	Y
F054004	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1080125	F016392	N/A	MKSAFDYKGQSSVWLTDTKMKRFKQGEEYAKRKQDKRGIHEQNQVFIYSKALSGKK*
Ga0104988_1080128	F054004	AGGAG	MTFSEVFGRVALIIALLMGINHVLTPSPQSQSIQVISKKKSLLKACVRLHKRKAKNYATVCEKRGIYV*
Ga0104988_1080131	F026857	AGGA	MTKEQANRLLDEVKDGNSYLSIKRITEALWLTGDAVRPLPIHSRPFSEDGINEWMESTRLAQSTGTGTAPIGNFQGNQSGIDENNERNQ*
Ga0104988_108019	F005703	GGGGG	MGWIAACVLIALLLPLMAFLYLDILETKNEAKTQVEKVEKLRRQVEQKDREREK*