Scaffold Ga0104988_10788

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10788
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29310
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (76.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F004759	Metagenome / Metatranscriptome	424	Y
F033000	Metagenome	178	Y
F047010	Metagenome	150	Y
F061792	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1078810	F033000	AGCAGG	MTLESKNCKACRPKRKPPTKLSAKEIHNKVQTGDMNVLVAKHLREKQAQDERNAQAIAARKRWLKVWKAELADVLAPIKWEIVSARNAWMYAKRKGYVDKATFYHEYMGMLKRAKEYAEYSHALHPRRPASAEWDDYIEPEVFTKIRDMWAALPPIYKQSRTPMLIKYRDEFTQVNKDSKFVPPRSLAYLKGEK*
Ga0104988_1078813	F047010	GGAG	MTKSFNRVAVFAVFNDADNSSASFAVRLMELGIASRAEAKPFAMEWASKKHDNEPIKQGQRGMTFVKRDTNAERAMNRVLEVCYPKADAPKPKTPKATANKVDPVAALFKKWQALSAGEKRRFTTLQLKA*
Ga0104988_1078833	F004759	AGGAG	MDKKDLAQDKKMIKSAVGKHEKNMHPGKPMTKLKKGGPTTDDRMRLGRNLSRAKNQTTG*
Ga0104988_1078848	F000332	GAG	MRWLLLLLLLGLVGAVAKNGCHVREFYGIGYTIHDPTERHREMMAWLDKNAGHCKSTEYVVIWNNLSEWAGAADSTWLRNKVVHGYKDALEREKK*
Ga0104988_1078849	F002933	GAG	MIPPIHKWYPMLGVADYPTKTDALERRTERLEEEYKQALKMKKVKNKIDDLEFELYVKKAEQNQLRLEIFTNRKLDILV*
Ga0104988_107885	F061792	N/A	VAHHRLIEGSNEYGKYFDIKLYQTIMARFYEPKVEDGKRVERRLYMGHSSQTSKQFMYHTLRVDVGANRQRDSDDMYSDESIIMPIYTEHFMKDEGVPFSLDAVFVDGVLDPTRSRHTPHYRLVADTDVRKFKAKVAAHFEPYIMLAQMRMPEFKAECNIDYRLGQKFGGEGYNRAYYMAIQEMWTDPEPRQQDIDVFFEMCQKAYDIIASKRGMQQADFQVGGSWYSRQNGNQNSTVDELAKPIEMTEFRRAILDRIHKYVGSNSMKKPEEVKQFPKHSEYPRSNIHT*