Scaffold Ga0104988_10785

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10785
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28983
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (13.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F053851	Metagenome	140	N
F073452	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1078537	F006181	N/A	MKKNLIHVIYPDEATYSYVATNDMSVEDNLERVFAEWNHGSGMECEMFIKSNKRSLSVNDIVCVNGKYFQCQSVGWNKVTDEYVINLENDVANSPRRSEGAWFALSDVMYSRSPDGAEATLDGIDVF*
Ga0104988_1078547	F053851	N/A	MHNFTLDYTDGLKIDNNFYDPEFAAGKESHYMVKVYFCHKKIKRSLQTHPDQLGITATIEELESTSNKTILTVNDCNLGCWIQPSFSKFFVPYHVDIYYNTELYQSDTLDCKFKLVNFTLHPKDDRELYTWMNVIENFKKQMQCDISIKNDTVASTTEFDHIADVKYKTNDANKQYYLGLHIGRFYQPNSQNPDVNYHPTGLHNKNSLDIINDILYYYTTII*
Ga0104988_107856	F073452	N/A	MRRIVTKDKKGKKKLVNVPSWDEIYVNNQLGQPAYDVSISSNGSGSLAN*