Scaffold Ga0104988_10771

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10771
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27616
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (91.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011484	Metagenome	290	Y
F025013	Metagenome / Metatranscriptome	203	Y
F027417	Metagenome	194	Y
F033321	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_107711	F025013	GGAG	MENVSFVKVTGTDGVEKEHAIIDRGNGEFTSMLKETYDKMVTDAENRTV*
Ga0104988_1077132	F033321	AGGCGG	MSDELEVLRLEYWHARNNPLFDKPEQYCYLLDLIIERIEELEKERAD*
Ga0104988_1077135	F011484	GAGG	MKELEQFLNVEAEWILERLSTGTESNDRNYYQGRLDQLAQVRRYLSMPQLMRERASK*
Ga0104988_1077141	F027417	GGAG	MEYDYRVTFITDYLTITTNVSLNLDDTIGNCSEEASEQARINGMNNVVDELGRFDETLINDITVTLLLKDEEIEL*