Scaffold Ga0104988_10767

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10767
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27278
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (41.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F055547	Metagenome / Metatranscriptome	138	Y
F072274	Metagenome / Metatranscriptome	121	Y
F099175	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1076723	F099175	N/A	LIGGLMVQNIEETIKKEHVEDLKDFATYLGVDFEDYLEFLHPDVDFDDYSR*
Ga0104988_1076724	F072274	N/A	MTTPDKTEENGIDGYISPNRMWAAVPWGEGKYISIYNGEQICVHHSLETAKKFIQKETRKRK*
Ga0104988_1076731	F055547	AGG	MIGTNWFQKKWGLDDPMLIDELYDRIVHLEQRVKVLEEENINTTNSLYEIANSLEARIDILASEPYNLNKGRK*
Ga0104988_1076736	F000345	N/A	MEEKQPNEFGKALQEWWDSDACKNLQQANEEARQRAVGKYFMLSEEDKIDMVEAITHIMCKAEREGCSHRGLQSALGIYPGGFWVNHLMDVHNSLWSYYHDKKQKEELEKDIKTLQDFTET*