Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10749 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10749 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26061
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (15.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26061

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (15.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F012574	Metagenome / Metatranscriptome	279	Y
F025030	Metagenome / Metatranscriptome	203	Y
F035767	Metagenome / Metatranscriptome	171	N
F093872	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1074913	F012574	AGGA	MYLIEKLKMSIMEILMKKHEYAEQVRQINCTSGYFHRFYELVSDYPRHEDAWQKLEEERGELGLDEKYSSYNSFRKAKKTYMDIRFV*
Ga0104988_1074916	F093872	N/A	MAQKSIKTKLLQGTLEKSRVKTFTPGEIGDPMFNLDAGEQRIYNRIREHLHLHKAGKQVDEIYLSIAARAIGHLLHNAEILSKDGAVMVHPNGARQVSAEWTAFKQGFELFLELSKTLGLDPKSRLTLEYFQDGSGDEEDEIAKLLKMN*
Ga0104988_107492	F025030	N/A	MKLRLLKEWNGKAPGKVGVFLSEYGEQMIKDGIAELLDESFIVEEMPQKQEVEPAPMYIPIPVPMSYFNDEADEEKINKPKNK*
Ga0104988_1074933	F008078	N/A	MTQSPKQKAKELFNHYHNIIQDIGGELGQEILVSILARHCALFAVNTLLNDKHPTEDFNETYYYWTEVEHELEHYEE*
Ga0104988_1074936	F003786	N/A	MNLAKYQPQNQDEKTIIEARPNRIANIEPKDAFRNVLNVISSIFPVYGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLVYRRKIIAAHDNEVAALRHNANMEEKARKSREELYANFPTMLKEFKGKDYTTVPLYWYDMCIQFGMIEYQEGEKRALWEEAQAIALKEPPESKDLMTIRSHAKKIEQGNTKRAAVIAQQLAVWRKVLKK*
Ga0104988_107494	F035767	AGGAG	MGYLSAKQINHLKDLQKSNYAGRRSFQGMSLRIVGLADAVIEFAELMEQCTLKEQSRVIDSATPIALEVYKSLVPVSSKAHRISTNPFKNKKMQGWEKNDRASMIVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVYGSTRAWYNKIVVKARNLSREKVIKQMRDECIFIMQERPKKFWQVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10749

Overview

Ecosystem & Geography

Associated Families

Sequences