Scaffold Ga0104988_10747

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10747
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26048
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F020886	Metagenome / Metatranscriptome	221	N
F036596	Metagenome / Metatranscriptome	169	Y
F074558	Metagenome / Metatranscriptome	119	Y
F085343	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1074711	F002149	GAGG	MTAVEYIEQSSVPEAMWPNLADWFGWFEKQGMVGIVRDEDGIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0104988_1074713	F000635	GGAGG	LTLTEIAQYAGEKVGKTDADTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDTEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRTNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0104988_1074715	F020886	GGAGG	VSLDEVSDLRDKVANVSERLARMEERQMTLISMIERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLVCSMAWDVLKNRFNG*
Ga0104988_1074716	F003112	N/A	MKRIAMWLTNLSLRFLMTGKEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES*
Ga0104988_1074720	F010603	AGGAG	MSNEFQRSPIKAKNKAVRIDGSNFANVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0104988_1074721	F004760	AGGA	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK*
Ga0104988_1074725	F001459	AGG	MGNKAMRKLKAALAFIRNQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNSSAVMKKSEALADACGYAKGFRGCVATLESLASQKLNSAIPGYGDGSDEPVAE*
Ga0104988_1074733	F036596	AGGA	MNKTKTWKIGEECVGGIIQAKISENVYFPASTAVKILIKDWKTKEILDSQVFGRIHESKLESFLHDMTTSYHASNVMEWVKENAWSHRVLVAFDGGDNWKTRVEPKTWSCS*
Ga0104988_107475	F085343	GAG	MKAIITITLTAMLMASGLAEDETEMNDFIGGVYRGGGNVHRAGSVIMTEDGLIFKSGSRFIYQNGQVCQHVGSTYLREDNSVVVRAGSAFVSNDGLTEKVGSCYIGPVNSFTAGSTTVRQGWASR*
Ga0104988_107478	F074558	N/A	MPLDPNDPLIPMPWQMDSIRAYRASKAMQAEEDALKMQRLRQEVEKGYDETPRGKASRAADLTAFLEQEKQKESGIPIGEEMGARMTAKGGPSILEATKMQGELDVESKMRQARIASIENSLAGGKSLLPTADINLGGVQRTVLAPEVGRTTADINQQIFQAQVPQLAKAYMAQGYDSDTAVKMAGSDVTKNLFKAQSSGKVILTSNDGMSTISYTNEQAQRMWKDPSTPKFIKTQLNNFFGESEEPAAANWIKTRLGR*