Scaffold Ga0104988_10725

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10725
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25036
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025506	Metagenome / Metatranscriptome	201	Y
F028167	Metagenome / Metatranscriptome	192	N
F071161	Metagenome / Metatranscriptome	122	N
F098933	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1072522	F025506	N/A	MKHFNNDTSAAIATAISGSSAVITFTQTWQPVVTFGVGILGIISGVLAVVYWGKKINRLDGKGKN*
Ga0104988_1072525	F028167	N/A	MAQPSADIIAGSQGFVRHGAATVTSVSYDAVIPQEDTVFTSFTVTAENGTATNVLTARGMSGITFKQGAFLPAGKGLKITGFVTSSGSVIAY*
Ga0104988_1072535	F071161	N/A	MKIKFVANPSGMFNLSYNAGEEVIMETKQAMLLIEAGVAVEIPALTSSKPVKKGKPVNPETELDAE*
Ga0104988_107258	F098933	N/A	MKTFIITIEIEHTDKTFERPEVQQFVAQIGSPQANWVKEMRKAFKQTVLGEKAHDIQVTYAIKE*