Scaffold Ga0104988_10721

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10721
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24706
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F002356	Metagenome / Metatranscriptome	567	N
F004837	Metagenome / Metatranscriptome	421	Y
F008996	Metagenome	324	N
F020667	Metagenome	222	Y
F024098	Metagenome	207	Y
F044982	Metagenome	153	N
F046907	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1072118	F046907	N/A	MPEDGEPVLITDVEGMQVVAWFQGGNKWHDDMWNSENHTWWAIEVNYWMPIPEIV*
Ga0104988_1072122	F004837	N/A	MTQEEYLLAQKHRHYWEQYQAALFMRLTPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAEANHHTVTHAINNPNP*
Ga0104988_1072132	F008996	N/A	MKLLANIAYHHHPNRVENLTKVIEAIKSYPLQSEIFVDTNDPQAAQELAHLPVTFHAHTSMGHPWELTSKHRNRIAEVYRHFDWVAYFEDDMMLPKEGFVNFTKQFDPMFEDNLYPSFTRIETYPNVEGEFSPDITFNPTPNMWKEWNGKTYVSLPFYINYHAFWMFSTKRLAEVLSRNPQALQVIPNNGLYRESLASLPIWSLELKPMLEMTEQGELADHCKVYHLSNNYRDNSRNIKEIFKR*
Ga0104988_1072134	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQAQ*
Ga0104988_1072136	F044982	GAGG	MEFDVFVGGSGKKLTDFQKQALPDFGVSLADGAIDNKSYALVTKWLEGVIKLAKQNLANSGAIASDSLSASIDFEPITLTDTSFVVAIVANDYWKFVDLGVKGAKSSSRAPNSPFQYRDKRPPIRPIQEWIAFKSIPLEGRDKIAANRSFAINIANKIRREGLRATNFMSNAVTEDMVAVLTENIAEVLGKSISVATVR*
Ga0104988_1072137	F024098	N/A	MLYKVSGSLIAQPNFRYVCDVKNPAGTTTLARLKCDKLPTTNFGFFDVQKVVETLVSPTKPSLTQTGFVDHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGGLYFPADGGFNDAVTQSLATNVRRTVYSDSYGWLCQGVGSGLASPQDIVATLTYYTAGGTLVRTYDVSIGSASGSTIFRFGVGPMNIKSLTSGQCQDGFAGSVNFPTAEGAYYTIIFADAGGNGTVPFTYVIGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL*
Ga0104988_1072138	F020667	N/A	MSVTLIAYPTANFIDDLTAWNNFNTRATADGADAVEAACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPNNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVMQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDSGGFTDILNQGGGWFQAPWWSLGPSIYVKKMVDLIFAEAGFRYSSNFFNSSLFNKLVIPYASGLRPINLSGSNIFAQSTGITTFAEDVDINLPFSKDTPAPFYDNPGYWVASSSIFVAPSVPTRWNIDVTLTVSGAVTPSYFEANMSVRNLTDSTDNAVITNLKGQTGRQFVVRFQNVTIPANTTANIGFIVTYDLFNNNFAIPSGATVQWTCLENPQSLGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDSQDPKLLYIEPWKDFYSSGVVDWTQKSDENAEQVLTNGDPNAYTNVIFKYKDMDDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIEGTLASGTVKALQTGYRLAQYNLINGQTEWAYQYGVSGNTALSVGILRMPFVSHIDNPYAPSVDLAFGQPRLVYYNAVNASGNPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFVATTTPPVANDPSGLFNGPIDPDPTDPGYEPPINPELPSEG*
Ga0104988_1072141	F002356	N/A	MNLKSAIETLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHQVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKAATQQNFNALAQAIQNLKKSN*