Scaffold Ga0104988_10710

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10710
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23371
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (43.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010026	Metagenome / Metatranscriptome	309	Y
F038240	Metagenome / Metatranscriptome	166	Y
F056612	Metagenome / Metatranscriptome	137	N
F079978	Metagenome	115	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1071016	F079978	N/A	MKLYAPEFAEMYVWATADPKSSKASYAPSKSTTPPPNAVHGHPIGRYDSDGCYWTFVPMTGAEDPTSPMSSKFVQHPQAKVEQTAAIKAKVWGSLNSFGSYKETEF*
Ga0104988_1071020	F038240	N/A	MATPAGNKMRVQVLLDPEALALMEREVQLRYNTSNRVTVSSLANEIIKSHYAILESQDE*
Ga0104988_1071021	F056612	GAG	MSDFESAFDAKLTLFDVKQKKSDKAPDKTGTVEIELSEAMKLAEYLTAHPGEDGYGGKTVIKIPVSAWNQCSTTGTEYISGKLWAKKPERNVAPPF*
Ga0104988_1071023	F091645	N/A	MPLDFTALFPEEPQPNHGPGMSYCVAPNARMFDYELLMPGERRMRGCLRAVDSEDAKRILLNRHPGATQIDIGAGRRIFPSSKKA*
Ga0104988_1071033	F010026	AGGA	MAVKSKVGTAAKKRKEPKPKLTLQGQGTNSKPNHGRKKTRGQGR*