Scaffold Ga0104988_10708

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10708
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23269
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1070820	F011391	N/A	MAKYQVVEGFTVLDKQYPATIDGEDVDHLDSLLQSGRIVPVADKSTSKADKAGDK*
Ga0104988_107084	F005528	AGGA	MRILTAILATLTSLTISLGIAQAASAPAHSSVAVIALQPLWQADRLDPIQPIRYRHGDTSWLPSLAKQAGWPDHAIPKLTQIVLRESGACPNRKGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAVCQELNICTQDPLLDPLTNLKAGLVLYNLSGFEPWNPCNWKKCK
Ga0104988_107085	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTDPAEVQSVGFLLATGDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKNIKVLMDLEIKTENR*
Ga0104988_107086	F021759	AGAAGG	MDAGLATVLAAAVATLGGIIIALMQLKGFRDENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSGSLTKTKQVATRKKK*