Scaffold Ga0104988_10695

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10695
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22605
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F003112	Metagenome / Metatranscriptome	506	N
F003962	Metagenome / Metatranscriptome	459	Y
F014827	Metagenome / Metatranscriptome	259	Y
F065536	Metagenome	127	Y
F078641	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1069515	F001459	N/A	MIRALKALKFFIRNYEWVNEPKWEHEDEKAWTGFLATPTGRKLSLILLNLTMRQNASAVMNKSDELANSCGHAKGFRGCVAVLESLAASKLNSAIQDGMDGSDETAVN*
Ga0104988_106952	F000635	GAG	MTLTEIAQYAGEKVGKTDSDTLTFLQKSASLNYRRVWNFAPWRETVTNSTYTLATGTRTVSLGSLVENPLSVAYDNSELQPMDLATIVSQDANLLNSDTTGTPSFYYFKGRNTGGTAQIDIFPTLQTSSTAVLQVIEKLQCLTRSNYQVDFPPSQSSLNDELRLPHVNHVVLSLTHADALERERQYGKAQVVTQAANADLAAMANYELSQVGGMKQITPNSLGELTIEEII*
Ga0104988_1069520	F014827	N/A	VLRAILEIIAAVFRIIPGWKEKRTQNIEGEWRDNRNAIERDLRGESWWLRNNDTSNPHDRDS*
Ga0104988_1069523	F065536	N/A	MDDAADSTAPIEKAKNGREIFTKELADEIVSACGSGFTLEKAGALVGVNPSTIKTWASRKPDFARRVESARKKHELSLLRDIELAGQKSWQAKAWMSERVYGYAQPSARLQVTQEHTHGISGNLAQLLAGIAMKKKITASAEKPKLENNSKYIDIQPIVKATQTDMSHNESCIELNSTQENGKNLPKRRHQRMRLRKPRAESLAKYTTTPPATPPAPI*
Ga0104988_1069530	F003962	N/A	MADDESKEGWLLNQDREQLKLANRFIGLLQRENAQLHSVLRLLGQLIDDMNANCSFEVFEHQWKGLTDEVERLSCFFQSHQKALKSLQDACPDVFDADEVDES*
Ga0104988_106955	F078641	AGTAGG	MGTDDQIGDLRERLARMEERQLSLYKMVETSLSNYADVVNRISSLEHLRTKALAIAGVVGLICSMAWDLLKNRLSN*
Ga0104988_106956	F003112	N/A	MFRTGLRLLLTPHDYACFNEAWKCAEANNRLSGETKYIGAVKHLLSVNRSIKRMVADGHNRDELVAAVVHLAVSLRYLESRKHGNG*