Scaffold Ga0104988_10691

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10691
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22466
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (67.44%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F014487	Metagenome / Metatranscriptome	262	Y
F019290	Metagenome	230	Y
F023585	Metagenome	209	Y
F024265	Metagenome	206	N
F025225	Metagenome	202	Y
F027777	Metagenome / Metatranscriptome	193	N
F033350	Metagenome	177	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1069110	F019290	N/A	MEGTSYWGTTNLKVASCVAAFGGTLRQSDPVTHIILENGTRQVTFWFNGGTGAEAKKQMECKWSDMTCDVESPIRYVRAALENRETLLGLVKTKAEPIQIIKRGGQTLLVPLNAKPELKKAILKAI*
Ga0104988_1069111	F090073	AGG	MSDILDDELNATFVRPSRDYKGQPLAEYTEGSRLLMIQCKDQQDSSVYFIWSFLYLHILLAKNRKEAIKLAWDKDAFREKVLDWVADKTSEDRELATNIVSSIIDEASKAMVSVVQSGEGTTLGNE*
Ga0104988_1069113	F025225	N/A	MIEINLLNQAKFFHKLQQYQQASKKNMADVINSKLGDVAVTAIGTTYRTTTAQIASELQRVEGKVVTKKVFKPFGLTKSGKIKKRKIGEFAVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKLGLGGLGMGTKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRPNLVRGDYSEKSIQRLGGGTLADSQKSQMEGIIFNRAGDLDTKYYPVRKRAISGAAKVGMPGLQMAVDKVMKDMNVYLARKNKEESDKIGL*
Ga0104988_106912	F088509	N/A	MISIERQIENGLATALAGVSGVNIYKSDTEGQRLLPNLVIQASIGSEEIIPYSGVFRCPATITYATRADTTTRSTFDAKFQEILQVMYQEPNLASALTTATLKVFLANVTSESPDIRAENRTWAKTISLDISCTSI*
Ga0104988_1069125	F005846	N/A	MTSFPLPARPVASAVPASHKEFAIGTSIEGKLNGWAGWFDQETKQGYNRHGKFASNHNLMAERIIGAGIKSRFVHCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVQPNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPFITNPNYCSPAWQKQRIRW*
Ga0104988_1069126	F005702	GAGG	MVIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELVLPSKNWVGRN*
Ga0104988_1069128	F027777	AGGA	MSEGLPTFWYEEPANKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRSLNLPVRGSREDRESLGDYDYNQQPIRRMK*
Ga0104988_106913	F086811	N/A	MISPQFKIEDALASLLTPISGLNVCIANRRGLRLFPYATIKASIGSQQIIPYSGVFEISVELNYSDSATRTTQAIFDDNYYSIFSTLYANNNTLKEKVQDKVTDLKIFMGRITTQTPTIRADKRAWQRGLTLSFIVTPDPTADGTRNYDFSDFLNSFYLGTI*
Ga0104988_1069131	F033350	GGAGG	MSVDVDVPRVKWSMLEWKTPEEKPKNDEKVLMDIGGEVAVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0104988_1069132	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLKELFKDFDHAKRENYKDIISHLDYSHRITKELLDRAKKYQKRDMEDKKK*
Ga0104988_1069134	F010463	AGAAG	VIAHPQELVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASQGLEKFVLGVTTPLDIPKELVPTYGKAGARRNREYSTVKKRWTLWKHQLESGMSMSELAKAWGVHRTTIMFAKSRNFIVRKAKGGSR*
Ga0104988_1069138	F024265	AGTAG	MNESYVTAEAKANGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0104988_1069142	F007164	AGGA	MSEKQVGMELLKTIRLLDKAKENAIEQMGQAIGLAADAGDILLSARQEGLDVEAIQTHAQINGEQARRYERVAKSRPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHAYIVKARQWLARKNVKAWSLSQKEQFLQEAKPIVDAYLEAGGELEKA*
Ga0104988_106916	F014487	N/A	MPLLLIALLFCSCSPKKRSDNNALPDYGEMGAASEAGRTKSE*
Ga0104988_106919	F006138	GAGG	MPATTIGQANLTFGLTAETIGLVQSFSETRNIEKVEARSASGDITGVAYYNPTTAYSISVAVTGLGALTVGGAYATLANATTVGTCRIDSIALNKTNTGFVTVDISATGYPNVS*