Scaffold Ga0104988_10687

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10687
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22309
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000649	Metagenome / Metatranscriptome	960	Y
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y
F078383	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1068715	F000649	GGAGG	MSKSATHYLPDGKVYKGEMHKVGKTLMTGAKHTPESKKLSHTPPKKAKK*
Ga0104988_1068729	F078383	GGA	MKTKGGARPGSGRKPTPISESRALALWKDGVNKKEIAKRFGVDYAVILYFFRKNKMTSRKKSKI*
Ga0104988_1068734	F002764	AGGAG	MKEPEDEAFEELAKRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAKELDKFAGAFGRDTVQSFAAFVRGMKR*
Ga0104988_1068735	F011742	AGGAG	MQTIEFVPFDWVDDDFNPEIDRIEVDYQWHEGDDSVGLISYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIKRNDQEIADERT*
Ga0104988_1068736	F020138	AGG	MNQQQINRLNAFWQDVEAHKALNPSLPESALVILKSVALDALLAAQDIEQIGVNDANN*