Scaffold Ga0104988_10669

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10669
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21625
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (30.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F015581	Metagenome / Metatranscriptome	253	Y
F024548	Metagenome / Metatranscriptome	205	Y
F041194	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1066912	F041194	N/A	MPAKLKRDKIYMQCHCCDDRRIIDLREYLLEDKHHDYLYSMFNDNFVYNEAKA*
Ga0104988_1066915	F015581	N/A	MNELTKPNAFVFKAFIDNEYKLCVCPRIDNKWSEADIVYIQDYDGAFDDVLHEKYFSVLFVGYEKTNDTNGKFTLKNVNAQYIKSDTAIASDMYANNSFFSTIEKGYQHFYEQSITSEREGIVSQTSEQENL*
Ga0104988_1066918	F024548	N/A	MKSADNVVELTDSDIKKYTKLKEGIKIEPNDCVHIYDNFYAKLSKGSIVCKEVVSKHNTILRKK*
Ga0104988_106696	F000962	GGA	MNIHVPEEIKNKYPHMEFRGKQRTLNDRTVMEAYNHATNQNFFYSFEEDFFWFPSQIPDYKLPKVS*