Scaffold Ga0104988_10664

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10664
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21528
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F014954	Metagenome	258	Y
F033353	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1066418	F014954	N/A	MKTITLGRARYTVRDDRDTFLSDVLKLTGKHKPVRPKGGCGRLYPADGASLSTAAYVARYYALNSTRHNFKGGAAPYGDANLVGFYDSLSDRLSVPQGEDSMEVCHED*
Ga0104988_1066419	F033353	GGAGG	MRTEFHNPEFQITSEAMQLPDGRWRVLLRDDDSGQMVGPARLFVAEADALAYAERLCA*
Ga0104988_1066430	F004450	GGA	MNWVAAGLIALVMSTAYLLDGPDEHDARVDTVEERIQKMCGENAAWKMLDDNSIQCFTHRGLKTRKVTL*
Ga0104988_1066431	F011669	GGA	MNDDDDYKLASLMYGIGITLLVLFALVGIAGLAGFLWGMA*