Scaffold Ga0104988_10652

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10652
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20877
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F005585	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1065228	F000545	N/A	MKQDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPSDRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLESISERYWTGNETKERPYNASL*
Ga0104988_1065229	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVAQITKEFGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK*
Ga0104988_1065230	F005585	N/A	VNGLKKLVLPYSTEGLSMATRGTIFYAFTKSREHSVFSSETHLNWHLLLLQQNSQEWWKVQSARIRISISLDTPLSWVDADFLLQKIGTTLSLTRNHNQNQYCDYCKYRWGANKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP*