Scaffold Ga0104988_10649

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10649
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20740
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (36.36%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F014486	Metagenome / Metatranscriptome	262	Y
F024058	Metagenome / Metatranscriptome	207	N
F032162	Metagenome / Metatranscriptome	180	N
F056412	Metagenome / Metatranscriptome	137	N
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1064912	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYANPEDVKKALVKVALHAFVNKINAKGRKGGLLDLATAKAQSIIDEMAQTCFLWGATSSDGYSLGTISAEKPSDYCGAISNGRD*
Ga0104988_1064918	F080893	AGGAG	MNHSINITNRNILEGEKANPQNCAIARAIKGKMKKKITDVSVLPSHVTLRIDKKIFVAKMPKAGANFIKRFDRGQAVNAFELNLKFKKDFALV*
Ga0104988_1064929	F009669	N/A	MLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYITGISKLVAVVSGIIFALTVKDAAVTGGTVAQTNEAKDRTNGENI*
Ga0104988_106493	F014486	N/A	MNIEKLLNENLESFYPWSDNENPPLDTNKSFVQKQKEIDEMFEGWRASM*
Ga0104988_1064930	F014229	GGAG	MNKLQLAAVALLSVFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVATIVEGLTVGTAPTPEQLQKALTDYLPEEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE*
Ga0104988_1064932	F010817	N/A	MGCATVTPNKIQDDKSSYDATTPKQYQKDNGGLISFVGDDALITPQARERYNNLIEMYKIKFKKEKAIQLKQDSGIKPYKDNFGNELFLIDSEHLVYFGVMNSWLKEKVSADNILDKTIDKINN*
Ga0104988_106498	F024058	N/A	MRENMRKNMTASEEAIITNSRNTPTYFGEVYLYEGTLVKVSYRTTAGNAVVTFLEGKDKDKVGTINLANAKLIEKENK*
Ga0104988_106499	F056412	N/A	MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYEHKVEVAHHNSMTINEKQIEEII*