Scaffold Ga0104988_10619

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10619
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19641
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (62.16%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F039992	Metagenome / Metatranscriptome	162	N
F053126	Metagenome / Metatranscriptome	141	Y
F065530	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1061910	F065530	N/A	VIGAILNIIASILRLIPGWKEKRVDRLEGDWKNNRDAIDRDLGPKPWWMRHNDPDNEHNRGR*
Ga0104988_1061914	F001459	N/A	VRTIRAILAFMRNHQWVNEPAWLEEDEKAWTAFLGTPTGKKLSLILLNLTLRQNSSAVMKEGQKLADACGYAKGFRGCVATLESLATAKLNSAIPGYGDDADEPVAD*
Ga0104988_1061918	F004760	AGGAG	MPVYQYEDTRNGSVVELEKPVADRDSVPRYLKRFSVPQKLTLVGVGEPRENPEGVNMTNLMKGYYSQEQKLGSRFKSQYTPDKIKRAAALQRSKQNV*
Ga0104988_1061919	F010603	AGGAG	MSDEFQRSPIKAKGKAVRIDSRRFTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHS*
Ga0104988_1061925	F003112	AGCAG	MCKRLATWLTSLSLRFLMTRAEYDCFREALKFASENNLMAKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTEAVVHLAVALKYLEGRGRES*
Ga0104988_1061926	F039992	GGAGG	VSLDEVHDLRGKIEDVDRRLIRIEERQVTLYKMIETALSSFGDLANRVTALEHLKTKMLLVAGAIGAIVSLAWDALKSRFSGG*
Ga0104988_1061934	F000635	AGGAG	MTLSEIAQYAGEKVGKTDSDTLTFLQKAASLNYRRVWNFAPWRETVTSSTYSVGTSRTVTLGSNVETPLSVAYDNSEITPIDLATIVSQDADLLAETRTGDPQLYHFTGRNTSGIAQLDLYPRLETAGTEPLRVVEKLKCLTRTNIIVDFPPSTQALDDELRLPHVHHVVLALTHADALERERQYAKAQTVVQTANADLAAMANYELSQVGGIKQISPVSLGDLSIEEITAA*
Ga0104988_106197	F053126	N/A	VSESPGTAPKAKNGKHQFTPEIEAKILDACGSGFTIEKAGALVGVNPSTIRTWCQRKPKFAEKVETARKNHELSLLKSIEQAGEKSWQAKAWMAERVYNYAQPSARLQVSGGVEHTATGGFAQLLAGLASRRAEKKAQVIETQEVKALPQPQSKYNSYCPTNELQPIVTTTPKNPGKPRPLRMRKRKPRAESLAKYPLHDTPPATPPATDSTRNTPLNNCDTKQKEDHAQETSQSSAEGS