Scaffold Ga0104988_10603

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10603
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19139
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F004208	Metagenome / Metatranscriptome	448	Y
F013889	Metagenome / Metatranscriptome	267	Y
F020144	Metagenome / Metatranscriptome	225	Y
F035276	Metagenome / Metatranscriptome	172	Y
F040099	Metagenome / Metatranscriptome	162	Y
F044304	Metagenome / Metatranscriptome	154	Y
F074866	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1060316	F074866	GGAG	MTETIKTCHNCKYYKDYDDVFDWISSRIFGFPTLSKCSHPDRWKDVDYVNGTVSPYTTCSTERSYGNCGRIGKNWEARK*
Ga0104988_1060317	F035276	GAGG	MSSYISCYNQETRELEHYKVPYDVAVYIQQLEFEIKYGSGGVKRLYPFRFGEKVND*
Ga0104988_1060318	F004208	N/A	MTNQEKQMSDYTLNPEAKPFSYTRENLFSCITRIVAHPHKTITEHDQSRALAIMLVFDDYFSNFLESDNNGSHYVYERDELDFQDFVRFKLCIDDYDYVSADEVLK*
Ga0104988_1060323	F020144	GAGG	MSNFYTKLPGTDVLRSRIDVFTLEDEAEKQSYRVELTVDNAGVFITSCDGGAREDMSIGHKDLAIAVARAILEAYGEV*
Ga0104988_1060324	F044304	AGGAG	MTTLNLTERQITILGIALTNLYDEIAKSGEGQQMRDDIMEFSRYIQKQTQEEN*
Ga0104988_1060332	F000919	AGGAGG	MRFRDVEFRWSKCNNKYELVKWYKAEVDGCEEREYCYVIAFFDETKEGYDMRTVGDRFFEDKDAWIVGKHAIEFLNAMFYELQKEKELE*
Ga0104988_1060334	F040099	GGAGG	MIYEVQTYDATDNTVYYETVEDAIDYEDARDVIAEKYPNRKVIAVIGKKL*
Ga0104988_1060341	F013889	N/A	MSRTFRKTEGWHSGAFRYPHTENERKQLEGVLHDPELMELPVSGLNHMRAREHQLPSSWDDNVISAYYEV*