Scaffold Ga0104988_10601

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10601
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18962
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.12%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F003459	Metagenome	485	N
F004837	Metagenome / Metatranscriptome	421	Y
F006105	Metagenome / Metatranscriptome	381	Y
F006621	Metagenome / Metatranscriptome	368	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F011581	Metagenome / Metatranscriptome	289	N
F012449	Metagenome / Metatranscriptome	280	Y
F035287	Metagenome / Metatranscriptome	172	N
F046337	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1060110	F009057	N/A	MATFRKFAFPSQKVADQLLASLQPLDNAVPLGNIDGLVCYDILFQDACPASLNAYIVWPKPCGVHSFLGWDEQYTADYQEFATPNTK*
Ga0104988_1060112	F007748	N/A	VNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQSTAEAQHKELTELRNELVVLRQRIEFGEHNPSP*
Ga0104988_1060115	F011581	AGG	MTYHSARPAKALTNALERLMISISAQELEENHVVLCEYRRACDLLGYDPAKARWTNVEAVNASGLPNDEPHTVDYYPLLNPEE*
Ga0104988_1060119	F003459	N/A	MNQELVTIPKSDISKQDIADIAANLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEQTVWDEAEKNGKTFSAFGADIQLKEGALTPDYTHDQVWSDLQASMKAREELLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFKG*
Ga0104988_106012	F006105	GGA	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTEYTLLKSANLSNYTERYDKFSLAVGSLETGSYRYEVYDTSSTVSAAVAVVETGLAYVQVVSLTFNTFANSIQYTVFGSSDEGVFDQTFDQSFA*
Ga0104988_1060120	F035287	N/A	MTRPAPPKKKKGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNNLEHLIPVKDPYL*
Ga0104988_1060126	F046337	N/A	MPIPMEEVFLALEDGNYAVGWLTKGQITFTNIHGEAWWTHEVTAWMYPNPPKS*
Ga0104988_1060129	F012449	N/A	MEVILTLLVSSLTALAIAEYHVLPQAWYRTWLGRHKPFSCVTCLTFWVAALLTLLTCDWMLAPVYGLASAGLTVVILQVTNR*
Ga0104988_1060130	F004837	N/A	MTQAEYLLAQKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYEQADLFAQANHHTVTHALTNTPSE*
Ga0104988_1060132	F006621	N/A	LANSTKASNDEAQVQARMDSLMMVITTLCDCIGAVDESNSPNAFAVKMKIVDKIDSLIDKIEY*
Ga0104988_106016	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGTLNLTVGVYFSDRVESISPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTTVSLTRFVESRDDRTAGWVATLSFQIPYSHSVCEIPT*
Ga0104988_106017	F001129	N/A	MLGQGGTMQFIDAAVTGANFDFIVVNAAATFTTLTGTGGENLLTAYALSGKSVSAGIVISGRNGGKITAVTPSAGSVIGYTFL*