Scaffold Ga0104988_10592

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10592
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18760
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (23.68%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F019476	Metagenome / Metatranscriptome	229	N
F078623	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1059210	F006018	N/A	MKKYSIKTNDLGMCMSVRCDFYQTCTNNSVNMFYKTQRKFEPVLDEGVCLSYDSGKNTTDYPDNCYPNLLKKIYVN*
Ga0104988_1059219	F019476	N/A	MNNNNKTKSAKVILDIEWEAVDDSDLPALWDWKRIKMPMDLTKVKYLGIHTLNGPENVSNWMGN*
Ga0104988_1059223	F009135	N/A	MISNPRYYLKINLPPNFNDLDAEVIKKDLMTYMNSRNQWGALYGPKSSKKGITIEKVSYRTNED*
Ga0104988_1059226	F007859	GAG	MKNLLIIALLCTGCTSGMYLRYSYNKALENLPPCSKVHAINNNYITYSMVENSTNSVYTVYTNYYRAYYNCDGKIINTIKN*
Ga0104988_1059227	F010081	N/A	MKEQVDSIIKKHCLKMQEIDKTKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYHLNNFTADDKKGHCC*
Ga0104988_1059234	F078623	GAG	MKDTLIIHNIHDKASREFVAAYGNRNDVTVLEDDGLNVRLAFPYISAFPTVVIPTPSYENTDENGTVTKIDGSIEYLRAPEDWNTVQTRIDYWENKVPNWKQTDSRYKQ*