Scaffold Ga0104988_10574

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10574
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18170
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (45.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F003889	Metagenome	463	Y
F027818	Metagenome	193	Y
F082558	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_105742	F082558	AGGAGG	MKTKKLVKRALRHPELYSPAELLFFNKWLRLKKQAKTAKINKDKKANS*
Ga0104988_1057424	F001806	N/A	MDAGTRQKRVEALEAIKNKAINMAQNGRDSFEVRDFVTSAKKELAYELPDQEAFTKAMNATLAYKAKKGK*
Ga0104988_1057429	F027818	N/A	MFSNTIVGNIAHLEVAVHEGREFLAITMYVKDQYDGVCRIKFNNSNGLHTAYNNGTLSVGQQLILTQWDVRINSIRTHYFKDDQLIALKYPEVALTRVRAVIGSAPEPKPAVAQQQPKAEPTLAELPF*
Ga0104988_105747	F003889	N/A	LKKSIFVVGPEYLAIGITAVVSAVTGGSWVANKLLERQRERLQQAFDYTGSQKRRIDILEDQINRMPLDYVLKVDFLREIQEMHNNFRQINDKLDKLMEKLLSK*