Scaffold Ga0104988_10567

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10567
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17992
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (67.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006885	Metagenome / Metatranscriptome	362	Y
F010599	Metagenome / Metatranscriptome	301	Y
F018928	Metagenome / Metatranscriptome	232	Y
F028423	Metagenome / Metatranscriptome	191	Y
F032149	Metagenome	180	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1056720	F028423	AGTAGG	MENLEKNELIQLIGFYKQKLSDVELESLKLQLQVNKLNSMVLSLSQEPVKKTK*
Ga0104988_1056721	F006885	N/A	MEYLLVIGLTLLSYWSIIKISNKKRMIFLSKNKYRQSSIYEMVKDIIPKQRFDKPKVITQSQRHIQKNMLRVVIADGSAYWILNNVFYTANAVNGRVDEETIKPLDIENMPTKELDKMLSILDDLKQGVGPNDSSSTGNKGI*
Ga0104988_1056723	F018928	AGGA	MIIRSLNTMEKIINKNKNLLWSGWDVIDLKESDVAKTSPMGIRVKDKWYLHRIYKPGRNGWDIPNKYKD*
Ga0104988_1056732	F045545	GGCGG	MIKQISLFFICKIKSHNLVDAGSCPFTGKSYSACLRCGVTVTK*
Ga0104988_1056733	F032149	GGAG	MKKKIIILILSAISISIAINLFFASRLSQLSDLDLFDIEEDD*
Ga0104988_1056734	F010599	GAG	MEMMLLIFFATLSFSFGLSYWATLDKLKKSNLLLAELFIKTRALEELNSQIDNNTSMSDDTIHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELRVKGLDNYSDKLLALLPENNTK*